We are using the random walk algorithm to the biology network for community detection. In the thesis, there is the condition to apply the random …

Hello, I was wondering if it is possible to use VG Giraffe to map reads only to a single connected component in a graph? Thanks!

Hi. Given a matrix that describes the edges' and their weights of a connected graph (see below) I want to extract a subgraph based on …

Hi, Given a protein-protein-interaction graph (e.g., from the string data base) and an outcome of a differential expression analysis (i.e., for each gene we have …

Hello, I'm looking for tools that allow identification of active modules in networks. A typical scenario is where you have a protein-protein interaction network and …

I use igraph package to get motifs in Protein-Protein interaction network, It has a vector output, But I need plot or draw of motifs. How …

I have a Protein-Protein Interaction data that get from [this][1] paper. In data we have two type: 1.**Normal** 2.**Cancer** But in two type of data …

I had read a paper of "Characterization of protein-interaction networks in tumors", In table of graph parameters, It has a parameter of **Graph Centrality** and …

I want to analysis of PPI for Normal and Cancer cells, I use graph theory to this work. Which graph parameters important and suitable to …

Protein-protein interaction networks are known. It is an undirected graph. Each row of the networks is like this (Protein 2 - Protein 6), and It …