Take a look at IGV's support for .tab files, in which rows are genes (or probes) and columns are samples/experiments. What does SB give you? I know they have many different "tasks", so it will depend on that. Cufflinks FPKMs? HTSeq read-counts? In either case, convert your SB data to that format, possibly with additional conversion to column-wise z-scores (i.e. use scale in R, if you know how). That will visualize nicely in IGV. You will need an IGV genome whose gene names are the same as the ones used in the SB analysis.

First of all, thank you so much for your reply. Yes, I have outputs of cufflinks FPKMs as txt file. Yet, I don't know how to convert to that format.