functional classification using translated probsets
hi,
I attempted to classified 500 citrus probsets as GO terms but there were no significant terms for them when I translated probsets to Arabidopsis AGI IDs and classified them I observed significant GO terms pretty related to my investigated topic in citrus.
Does it make any sense using converted Ids of another organism to report GO terms?
thank you
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Jean-Karim Heriche
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zizigolu
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zizigolu
1 answer
Yes, for this kind of task, it's pretty common to map genes by homology/orthology from a poorly annotated species to a better-annotated one, usually a model organism.
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