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Does your final sentence mean that R packages are not an option?
yes i am trying it... but its very difficult for me... if possible can you send me some link where they will provide good tutorial for doing meta analysis???
There are so many R/Bioconductors based tool available for Microarray data analysis.
Have a look on following links:
http://www.bioconductor.org/help/workflows/arrays/
http://www.stat.wisc.edu/~yandell/statgen/reference/array.html
Analysing Microarray Data In Bioconductor
thanks... i ll try out
and i tried network analyst tool, but i couldnt upload big data. it supports only 50kb size..
Is something like http://www.stemformatics.org/ or https://www.oncomine.org/resource/login.html what you are looking for?
what you have mention for stemformatics is like limited to only some datasets.
Aye, I know, and so is oncomine.