Plot coverage data
Hi again guys I need to perform some coverage plots in two dimensions coming from bedtools coverage file. I've been thinking about using r but I really don't know if it's the best alternative. I need something simple to get a two dimensional graph of the coverage and maybe later add the annotation, but this is not really urgent now. Thank you very much have a nice day
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Doing that from the bedtools coverage file is straightforward, we usually do these graphics and for that I simply use the matplotlib library with Python (or to make it interactive, with Bokeh). With R should be as easy.
High salt thanks for your reply. I would like to have a plot of the coverage for each nucleotide. If you have the script that takes input from bedtools will be great if you can share with me.