Is there a way to find out all Ribo-seq datasets for Arabidopsis thaliana in NCBI SRA
I want to find out all available Ribo-seq datasets for Arabidopsis thaliana. But I don't find a easy or efficient way to search for these datasets. Now I just searched "arabidopsis thaliana" in NCBI SRA and checked the results one by one. I think this is not a smart way. Anyone has some suggestions? I appreciate it.
1 answer
Beside the suggested link by genomax2, you should also be able to find samples in the biosamples database - the database includes all ENA samples and samples from other sources.
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Try searching GEO with arabidopsis as the organism and "ribosomal" or "riboseq" as additional fields.
Edit: A cursory search suggests there might only be one: GSE40209/SRP014909
Some more results here.