mRNA stability: 3'UTR
I am interested in knowing if there is any software that predicts the binding of molecules to the RNA, and particularly, molecules that may be affecting mRNA stability. Thansk
rna
• 1,568 views
•
link
written
by
aromicspcb •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to predict the affinity between Protein and RNA?
written by Alex •I have a list of RNA binding proteins from HyDRa prediction. I have a long list of mRNA, I'm interested in. 1. For the list …
-
Comparison between z-scores of protein and mRNA levels
written by Camilo Andres •Hi! I am working with data from the TCGA project, and noticed that a lot of genes have mutations in the 5 and 3 unstralated …
-
Estimating mRNA 5' degradation from RNA-seq illumina strand-specific reads
written by Adrian PelinI am interested in seeing whether one of my conditions has more 5' mRNA decay compared to another condition. This may be happening to only …
-
Whole Genome Seq Analysis Software for Identifying Specific Gene Variants
written by dk0319 •What are some of the popular free software tools for analyzing whole genome sequencing data? I am particularly interested in analyzing the sequences that map …
-
Given a protein domain, like a TPR or zinc finger or some other one, can you predict what RNA seque…
written by Joel WalleniusHello! Question in the title. I am trying to find out if there is a tool somewhere that takes a protein sequence or structure and …
-
RNA-Protein interaction motifs?
written by d.awwad19 •Hi guys.. Are there any tools or software available to dock RNA molecules (accepting RNA sequences as input) to proteins of know structures, and identify/predict …
-
Webserver or Program for Protein Ligand Prediction?
written by joseph.luttrell •I have a protein structure that is in the Protein Data Bank (PDB) and I am trying to predict ligands that may bind to it. …
-
Simultaneously Visualizing Secondary Structure Of Two Rna Molecules (Ie. Ribozyme + Target).
written by symphx92 •<p>I am designing synthetic ribozymes, and need to see the secondary structure that arises from its flanking arms binding to a target mRNA. I've used …
-
3 Utrs Annotation
written by Biostar User •<p>Hi all,</p> <p>is there any software for annotation variants located in 3' UTRS ? How can I check if a variant is located within regulatory …
-
Tools For De Novo Transcriptome Assembly Of Ion Torrent Reads?
written by Ahdf-Lell-Kocks •<p>I've seen on Ion Torrent's developers site that people is using MIRA as a <code>de novo</code> assembler of Ion Torrent RNA-seq datasets. I am interested …