SNPs location in DNase I hypersensitive sites, whether its in the middle or tail of DHS sites
Hi, could anyone tell me a easy way to know the location of SNPs in terms of the DHS sites? I would like to know the distribution of SNPs (percentage of SNPs in the middle of DHS site peak and in the tails of DHS site). How can I normalize the DHS peak since each one has different length? Thanks and looking forward to the reply.
• 1,852 views
•
link
written
by
bright602 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Exceptionally high peak/reads in ATACseq bam and peak files
written by bright602 •
-
The feature distribution of genome itself on chip-seeker
written by bright602 •
-
Removing bases from reads at specific positions (in the middle)
written by Rezenman •
-
How to know the genome coordinate of DNaseI hypersensitive sites large peaks?
written by bright602 •
-
Looking for a data base of functional SNPs.
written by Pol
-
Exome-seq: many reads with mate pair mapping to different chromosome
written by murphy.charlesj
-
Is it better to find distance from peaks to genes or distance from summits of peaks to genes?
written by mary99 •
-
How to calculate protein length according to SNP position
written by hntiger1688 •
-
Chip-exo peak-pair distribution heatmap
written by sourav.por •
-
Concat multiple CDS and binning, to show relative position of SNP in CDs. How to?
written by Chirag Nepal
