Hello, When we convert plink 1.9 file formats to plink 2, how in .pvar file recognises which allele is alternative and which is the reference. …

I want to calculate sample size to achieve certain amount of power for GWAS? We are not using any case/control, it is a discrete data. …

Hello! I'm trying to understand what is the best algorithm for GWAS nowadays. I know we have many tools available like Plink and Hail, but …

Hello, this is my first post in this renowned group. Acutally, I am struggling with Haplotype based GWAS. I am doing GWAS on a plant …

Hello, I want to do an association test with plink. I have two vcf files: one has all common variants for case population, the other …

I was thinking about haplotype association analysis recently. I was thinking that a lot of haplotype association methods use an EM algorithm independent of case …

Hi All, I am trying to search list of non-overlapping haplotype blocks for CEU population (or based on 1000Genome project). I searched Hapmap and 1000 …

Good morning, I'm doing a research on GWAS and I've obtained some file *.eigenvec* and *.eigenval* after executing the command `--pca` on PLINK 1.9. How …

Which bioinformatics blog(s) do you read the most? Previous editions: - [Your favorite bioinformatics blogs (October 2011)][1] - [Your favorite bioinformatics blogs (March 2010)][2] The …

<p>I am trying to construct haplotype genotype using PLINK (if not possible need to use other software). What I mean by halplotype genotype is two …