Hello everyone, I want to assign COG categories to protein of my bacterial genomes. I have already done completed annotation part of the genome. But I'm finding some difficulties to work with COG, since there is proper way out of using COG. If someone of you have worked with COG before, please help me with this.
•
written
by
glady
1 answer
WebMGA can do that for you.
You just have to plot it as you wish.
OR
get cog database from here and align it with your sequences by local blast program and find best hits based on identity, bit score or coverage yourself. Hits will have information about the cog id which can be linked to COG category for better display.
I edited the answer.
Hi,how can use COG database for essentiality fuhrer protein analysis,for checking tru homologus, with COG database bacteria.
Log in to answer this question.
-
Choosing the better input files for COGclassifier tool
written by anna •
-
Basic annotation of refseq bacterial genomes
written by biobiu
-
Highly similar bacterial genomes
written by karthic
-
Protein categorization using COG
written by genious.kalia.141198 •
-
Pathway annotation using sequence alignment
written by sharmatina189059 •
-
A gene is assigned with more than one COG categories
written by chuipeng1991 •
-
WebMGA Server frozen. Any other alternative?
written by buthercup_ch •
-
Construction of metabolic pathway
written by glady
-
on line COG analysis
written by buthercup_ch •
-
MAUVE - genome alignment
written by glady
