This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Tool: BPGA - Bacterial Pan Genome Analysis pipeline

BPGA is a fast pan-genome analysis tool for microbial genomes. Along with regular pan genome profiles, BPGA also provides detailed statistics and sequences with their downstream analysis like KEGG/COG assignments and phylogeny based on core, MLST as well as pan genome. In addition, it also studies genes with extreme/atypical GC contents as that of the genomic GC content, sub-grouping of large datasets etc..

BPGA Sourceforge Page.
BPGA HomePage.

It was recently published in Scientific Reports.

Any suggestions for further improving the tool are welcome.

sequence genome comparative-genomics bacteria
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updated by Ram Ram • written by bpgatool • bpgatool

2 answers

Hi, would this software helpful to find out variants in whole MLST database?

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written by ambrinaakbar • ambrinaakbar

How can I update COG and KEGG data for using it with BPGA?

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written by Dattatray Mongad Dattatray Mongad

COG is 2003 database with update on 2014. As of my knowledge it has not been updated since. So BPGA uses this only. You can use KAAS to re-annotate the fasta file.

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written by Naren Naren

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