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Tool:BPGA - Bacterial Pan Genome Analysis pipeline
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2.6 years ago
bpgatool • 80
@bpgatool26448

BPGA is a fast pan-genome analysis tool for microbial genomes. Along with regular pan genome profiles, BPGA also provides detailed statistics and sequences with their downstream analysis like KEGG/COG assignments and phylogeny based on core, MLST as well as pan genome. In addition, it also studies genes with extreme/atypical GC contents as that of the genomic GC content, sub-grouping of large datasets etc..

BPGA Sourceforge Page.
BPGA HomePage.

It was recently published in Scientific Reports.

Any suggestions for further improving the tool are welcome.

genome sequence Tool comparative-genomics bacteria • 2.4k views
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3.2 years ago
ambrinaakbar • 10
@ambrinaakbar43123

Hi, would this software helpful to find out variants in whole MLST database?

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2.6 years ago
@Dattatray Mongad31025

How can I update COG and KEGG data for using it with BPGA?

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COG is 2003 database with update on 2014. As of my knowledge it has not been updated since. So BPGA uses this only. You can use KAAS to re-annotate the fasta file.

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