Hi,

I'm currently working with the net alignments available from the UCSC. I was hoping that there would be a bioconductor package out there that would allow me to both store this data and manipulate it - but a look around hasn't really turned anything up. I was wondering if I've missed something during my searches or what people use to manipulate this type of data programmatically (in R or anything else). I'd ideally want to be able to handle alignments between synteny blocks in multiple species - not just pairwise. Thanks