WGNCA RNASeq without time series
Hi all,
I'm new in using WGCNA. I have RNASeq data without time series (just tumor vs normal tissues, let's say 2 conditions). I have already done the DESeq2 normalization. Now, my question is: Can I use WGCNA on my data even without time series?
Any idea, guidance, or suggestion?
1 answer
As said by chris you don't need time series, you just need numeric or categoric trait info to perform correlation with.
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WouterDeCoster
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You don't need a time series for running WGCNA.