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gene families geneome versions

Hello,

I have four versions of a diploid genome. I've identified n particular genes from v1 and would like to map them into v2-v4 and identify families from the clusters. Please can you advise whether this pipeline is correct? 1. Create a chain file between v1 and v4 2. Run crossmap (or liftover) using chain Once I have the new coordinates what should I do next? Can you suggest a paper?

Regards,

P

rna-seq alignment
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written by pancho • pancho

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