This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Submission of adapter-removed and QC-trimmed sequence reads to NCBI SRA or EMBL-EBI ENA databases

Hi everyone,

This may have been asked before, but can adapter-removed and QC-trimmed sequence reads be submitted to the NCBI SRA or EMBL-EBI ENA databases? Strictly speaking, this type of sequence data is not 'raw' sequence data, but can it be submitted to support an RNA-seq experiment for a peer-reviewed scientific publication?

Best wishes and thanks in advance,

David.

rna-seq sequencing sra database
• 3,344 views • link
updated by LLTommy LLTommy • written by david.machugh • david.machugh

2 answers

As long as you submit information about what you did to get the data being submitted.
That said is there a reason for not submitting the raw data and providing instructions on how one can trim/process that data in your paper/supplementary materials/SRA submission?

• 0 views • link
written by GenoMax GenoMax

Does it have to be ENA? Maybe EBI's BioSamples database is an option for you, in case ENA is not flexible enough for your 'format'.

• 0 views • link
written by LLTommy LLTommy

Log in to answer this question.

More posts like this