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Question: How to compare Neanderthal ancestry blocks between two sets of populations using SNP data
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I have SNP data on the Human Origins array. f4 and D statistics already tell me that these two regions have similar amounts of Neanderthal ancestry.

I want to determine whether the Neanderthal ancestry between the two regions comes from similar or different parts of the genome. I am not sure where precisely to start, and I was wondering if anyone has suggestions on where to start with this. Thanks!

ADD COMMENTlink 3.9 years ago devenvyas • 570 • updated 3.6 years ago natasha.sernova ♦ 3.5k
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Anyone have any ideas?

ADD COMMENTlink 3.6 years ago devenvyas • 570

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