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Targeted capture sequencing data

I am working on whole genome and exome genotyping data and also need to do some analysis with the targeted genotyping data. Is there any database I can go to download these targeted capture data sets ? I have tried Illumina website, but all they have is information on targeted capture method and don't have any output data (sample data) from targeted capture.

targeted sequencing
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written by MAPK MAPK

1 answer

Do you mean you want to download fastq data from Illumina exome enrichments, and from Illumina targeted sequencing, such as the TruSight capture panels?

If you register for a BaseSpace account than you can access an assortment of different datasets:

BaseSpace Public datasets

If you want the resulting genotypes (in vcf format?) then I'm not sure.

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written by rbagnall rbagnall

I need the resultant genotypes in vcf format. Thanks

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written by MAPK MAPK

Then you can run them through BaseSpace analysis pipelines.

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written by igor igor

@Igor Thanks, Do you know exactly which pipeline I can run in this case?

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written by MAPK MAPK

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