I'm using MuTect2 to call variants. The output vcf is in 4.2 format. I was wondering if there's a way to configure MuTect2 to use vcf 4.1 format instead?
Hello, I am using pindel2vcf and the first line of the output VCF is: ##fileformat=VCFv4.0 However in the RELEASE it claims pindel2vcf was updated to …