Splice Junction Mapper For Dense Genome
Hi,
Is there a splice junction mapper for RNA-Seq reads for dense genome (like viruses) ? Or maybe use an more general tool (tophat, splicemap,...) with specific parameters ?
Thanks,
N.
• 2,319 views
•
link
updated
by
Biostar
•
written
by
Nicolas Rosewick
•
written
by
Nicolas Rosewick
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Optimal parameters for Tophat on drosphila data
written by Rox
-
How to extract reads supporting protein-coding gene splice junctions from STAR's SJ.out.tab output
written by Nicolas Rosewick
-
Counting reads supporting a specific splice junction from bam file
written by Nicolas Rosewick
-
Adapter for RNA-seq alignment
written by chjiao3456 •
-
Local Alignment Of Rna-Seq Data
written by Nicolas Rosewick
-
Average Percentage Of Rna-Seq Reads Coming From Known Annotation (Ensembl, Refseq,...)
written by Nicolas Rosewick
-
Strand-Specific Rna-Seq Alignment
written by Nicolas Rosewick
-
Rnaseq : Overall Statistics
written by Nicolas Rosewick
-
Tool: Mapsplice: Accurate Mapping Of Rna-Seq Reads For Splice Junction Discovery
written by Istvan Albert
-
Tophat Time And Memory Requirement
written by Nicolas Rosewick
Do you know the transcript structures for this genome? If not, do you know what splicing signals are used?
I mean that there are a lot of overlapping transcript