Retrieve Gene Annotations using BSgenome
I have a matrix that consists of gene names. What is the most efficient method to retrieve the gene annotations using the BSgenome.Rnorvegicus.UCSC.rn5 package.
Example of matrix:
Oxtr
Ebf2
Ppp1r1a
Kcnc3
Thanks in advance
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mastal511
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bioinfc37 •
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bioinfc37 •
1 answer
Have a look at the Bioconductor AnnotationDbi package documentation, and a couple of the vignettes - Introduction to Bioconductor Annotation Packages, and the Reference Manual.
https://bioconductor.org/packages/release/bioc/html/AnnotationDbi.html
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