Conversion of VCF file to Vranges
I am using SomaticSignature Package for analysis of TCGA data. I have VCF file and need to convert it in vranges. How can I do this conversion.
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spaladug •
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written
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Ishtiaq Ahmad Khan
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written
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Ishtiaq Ahmad Khan
1 answer
The following code should do it:
vcf <- readVcf(x, genome = genome)
vr <- as(vcf, "VRanges")
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spaladug •
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