How to create OTUs from 16S rRNA sequence FASTA file to species level with metagenomic data analysis? (Step by Step)
I have data of sequences from a sample and would like to diverse them in intervals based on similartiy to references with 97% as same species, 97%-95% smilartiy is same genius and goes on. I have raw 16S rRNA data and would like to star with sequence data as FASTA file and continue from there with trimimn , alignment and so.. Please help me wih this. as it sounds I am a lot unexperienced beginning to be a beginner :)
• 3,052 views
•
link
written
by
Clark_BioMorgan •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Can a spiked-in negative control still be considered a true negative control in 16S sequencing?
written by Vojtěch •
-
Problem at running Automlsa2
written by muhammadirfanulislambcsir •
-
Abundance of ARGs per copy of 16S rRNA genes
written by lea •
-
Possible rRNA contamination in one sample
written by bioinfo355 •
-
Chimeric RNA (noncoding RNA) validation and quantification using RNA-seq data
written by machao9008 •
-
Star VS hisat2 for splicing reads
written by Buffo
-
Read mapping problem with STAR
written by Ricky •
-
Star-Fusion last-matching gene pairs file
written by genya35 •
-
Shot Gun metagenome sequence analysis
written by venkateshbiotech •
-
Find All Annotated Rrna (Rdna) Sequences
written by predeus
Bioinformatics For Metagenomic Analyses
Bacteria identification using 16s rRNA sequencing data
Tools For Metagenomic Data Analysis