Entering edit mode
8.3 years ago
DVA
▴
630
Hello,
I'm trying to compare two vcf files, and I understand that VCFtools output will definitely show vcf1 and vcf2 differ, when they are AA vs TT. But how about the following two cases:
- AA vs AT -- When I see ALT1 column is A, ALT2 column is T, how would I know it is AA vs TT, or AA vs AT?
- What if AT vs AC?
Thank you very much.