RNASeq analysis cell specificity
I was referring to CellCODE paper and I am not entirely sure what they mean by Interaction F test and Interaction T test.
Please let me know if anyone can help. Thank you in advance.
rna-seq
• 1,304 views
•
link
updated
by
Devon Ryan
10K
• |
written
by
Megh
2
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to get the sample ID number to print with variant Information
written by bennen2 1Hello, I am very new to bioinformatics and I am working on analyzing a file. Using code: `bcftools query -f '%CHROM\t%POS[\t%GT\t]\n' Regiononly.vcf.gz` Prints out the …
-
Mutation rate of repeat elements
written by kanamori.shunsuke 0Dear all, I was told that ancestral repeats cannot be used to build a neutral model because they have a different mutation rate, but I …
-
GCTA - Unbiased Estimate of Inbreeding Coefficient
written by kramonikov 0Hello, so I am working with GCTA (https://cnsgenomics.com/software/gcta/#Overview). In the 2010 Nature paper (https://www.ncbi.nlm.nih.gov/pubmed/20562875, online methods section) and the 2011 paper (https://www.ncbi.nlm.nih.gov/pubmed/21167468, "Estimating of inbreeding …
-
Tripartite Network Construction
written by Mohita 7Hello All, Does anyone know how to make tripartite network using cystoscope.I have gene-gene network and drug-gene network. I want to integrated these two networks. …
-
Calculating each gene's mean of intron length
written by userlee7655 1Hi, I want to calculate the mean of intron length of each gene in mouse(mm10) or human(hg19 or hg38). The rationale of doing this is …
-
Please explain the significance of following terms used in cytoscape.
written by miglanivarnika.26 2What does these mean? and what is the significance of score when I use different data source, like PubMed query or Disease query etc. "SUID","coexpression","cooccurrence","databases","experiments","interaction","name","neighborhood","score","selected","shared …
-
CellCODE installation issues
written by Megh 2<p>I am trying to install the CellCODE package in R but it keeps giving me the following error -</p> <p>Error : Function found when exporting …
-
Detecting random distribution of reads in ORF from the assembled transcripts
written by seta 191Hi all, I read in a paper (http://www.ncbi.nlm.nih.gov/pubmed/25881092) that the authors assessed the sequencing bias via detecting random distribution of reads in ORF from the …
-
Gavin protein protein interaction data set -2006
written by deepthi_vr 0I am doing a project in Protein interaction clustering. I am using Gavin 2006(Proteome survey reveals modularity of the yeast cell machinery) interaction data set …
-
Environmental Genome Project Data - Incorporated Into Any Other Databases?
written by pilotlog 4<p>Hi everyone,</p> <p>I came across the National Institute of Environmental Health Sciences Environmental Genome Project paper recently (2004 Livingston - Pattern of sequence variation across …