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TUTORIALS about Hi-C data analysis

Can anybody guide me to find “TUTORIALS” about Hi-C data analysis so that I may be able to analyze Hi-C data independently? Thanks

genome
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updated by Adeel • Adeel • written by shiningstarbzu • shiningstarbzu

sorry for the delayed reply, yes @Dogancan I have Raw data (.fastq).

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written by Adeel • Adeel

3 answers

homer hicup

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written by Czh3 Czh3

You can use HiCExplorer, here is a tutorial: http://hicexplorer.readthedocs.io/en/latest/content/example_usage.html

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written by Fidel Fidel

HiC-Pro documentation is pretty thorough.

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written by Dogancan • Dogancan

@Dogancan hope you will be good, thanks for mentioning HiC-Pro for Hic data analysis. i am trying this pipeline, but i could not get enough understanding how to start it because i am quite new to computational genomics ! Can you please share some comprehensive notes or step by step list of commands? Yeah , i have gone through its manual, i have data from Arabidopsis, i don't know how to incorporate my data into it. Thank you.

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written by Adeel • Adeel

Do you have your raw reads (fastq)?

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written by Dogancan • Dogancan

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