I want to download scRNA-seq counts data from GEO, eventually I want to have a H5AD file. Usually for counts data, I download three files: …

I need to analyze a LINCS dataset for my research study. I have *downloaded the level-5 LINCS data from the NCBI Geo database* (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70138) in …

I am trying to submit my scRNA-seq data to GEO. [GEO submission guidelines][1] state that I should upload metadata, raw and processed data. And they …

[OMIM][1] is good, but I need to download data freely. Any one knows any database like `omim`? [1]: https://www.omim.org/

Hello, I'd like to make some annotation of methylation microarray by NimbleGen. I have preprocessed data from GEO Let's take this one: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM565262 All I …

Hi all, I need to merge 10 microarray datasets of the same platform. Any hint how to do it? Is there any R package for …

I am downloading some GSE data sets from GEO NCBI but the speed is too slow 155KB/s, does anyone know other ways to download the …

I am working on several GEO data sets, the samples are GSMxxx, can these samples be converted to TCGA format type TCGA-xx-xx. For example, data …

Hi I'm trying to use NCBI::eUtils to obtain microarray / RNASeq datasets from GEO for use in a meta-analysis. I've based my searches on the …

<p>I posted this question a few days ago and got kindly help. However, the suggested dataset (<a href='http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24565'>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24565</a>) is from RNAseq (maybe I am wrong, …