Comparison of two similar e coli genomes

What is the best way to perform a nucleotide by nucleotide comparison of two very similar / almost identical genomes?

genome

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updated 10.5 years ago by 5heikki

• written 10.5 years ago by biology1234 •

1 answer

Nucmer is pretty good for long dna - dna alignments.

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updated 7.9 years ago by Ram

• written 10.5 years ago by 5heikki

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