Thanks. I will try gene2pathway.
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Hi all,
I have read through the related questions that popped up but I couldn't really find what I wanted. Here goes:
I assume getting things in text is perhaps the first step, hence the initial question.
Thanks.
There are numerous tools in R Bioconductor for working with KEGG. Try searching at their website and see if any do what you want. Useful starting points are KEGG.db and gene2pathway.
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Hi! Sorry, I don't want to be rude, but have you looked at http://www.genome.jp/kegg/soap/doc/keggapi_manual.html? It describes how to access KEGG via Perl/Ruby/Python/Java (no R) and it is quite a versatile interface to retrieve data associated with pathways and genes. However, I am not sure if you can get the network related information you are seeking via that interface.
Thanks Joachim.