I'm a Computer Science undergraduate writing my thesis which is about analyzing open source bioinformatics projects and extracting standalone modules. I need those projects to be written in Java and preferably be stable or mature. So far I've found a bunch of projects via SourceForge and I was wondering if there are any notable ones that are not hosted there. A different repository that has a bioinformatics category would be helpful too.
Here's a list of the most promising projects I have so far:
Thanks in advance.
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kam.stratos •
... Edit and using the seqanswer wiki.
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Pierre Lindenbaum
That edit is a thread killer. Thanks!
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kam.stratos •
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Philipp Bayer
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I think SourceForge is going out of fashion and it's being overcome by Github.
I agree, but it does have a "bioinformatics" category and supports filtering based on project maturity. Thanks for your suggestions below.