Thanks for your answer. How do I split the alignment?
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choosing a model for each codon in jModeltest
Hello!
I want to choose a model for each codon in my MSA, but how do I implement this in jModeltest?
Thanks :)
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1 answer
jModelTest does not do selection of models of codon evolution. Do you mean instead, select a model for each codon position (first, second and third)? If that were the case, you should split your alignment in alignments of these positions
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I would write a script for this but there must be software doing this.
You may want to try translatorX. One of the outputs are the position-specific alignments (at the end of the results page)
Hope this helps,
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