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How to combine two different affymetrix chip versions?

hey

I'm working on a microarray analysis using R/bioconductor and need to merge two datasets (human gene 2.0 ST arrays and Human Transcriptome Array 2.0). what would be the best way to pursue this so I can do downstream analysis like GO and differentially expressed genes with the whole data set?

Thanks!

microarray r
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updated by Ram Ram • written by blubb1 • blubb1

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