Difference between MrBayes and Beast MCC tree

I am wondering what is the difference between the trees if one uses same substitution models like gtr + gamma.

tree

• 3,505 views • link

written 10.5 years ago by Pappu

0 answers

No answers yet.

More posts like this

Pooling replicates for CHIP-seq peak calling
written 5.7 years ago by Pappu

I am wondering what is the difference between pooling 2 replicates and 2 IGG controls for ChIP-seq peak calling compared to running the peak calling …
RSEM expected_count vs normalized_count
written 5.8 years ago by Pappu

I am wondering what is the difference between RSEM expected_count vs normalized_count and which one should be used for DESeq2 or EdgeR.
Nucleotide/protein distance library based on common substitution models
written 5.9 years ago by Klios3th •

Hi, I need to find a way to evaluate the distance between multiple sequences from fasta/phylip files (either nucleotide or proteins) and build a distance …
Workflow for making a phylogram
written 10.1 years ago by martin_sperfeld •

Dear Community, Can someone maybe have a look on my workflow, for generating a phylogram? I would like to make a phylogram with 250 unknown …
Tree independent simulation of haploid sequence evolution
written 10.3 years ago by confusedious

Hello everyone, I have performed numerous simulations of nucleotide sequence evolutions down phylogenetic trees, but I would now like to try something a little different. …
comparing substitution rate/divergence of two different genes
written 11.6 years ago by Pappu

I want to compare the divergence or substitution rate of two genes among pair of organisms in two trees by comparing the branch lengths that …
Renaming Sequence Ids Of Phylogenetic Trees For Manuscript
written 12.3 years ago by Pappu

I am trying to have consistency in the sequence names of the phylogenetic trees for manuscript. I have obtained the sequences from Ensembl and Uniprot. …
Merging Bootstrap Values And Posterior Probabilities
written 12.4 years ago by Pappu

I made phylogenetic trees using RaxML and MrBayes. I am wondering how to merge the bootstrap values and Bayesian posterior probabilities of common branches to …
Differences In The Phylogenetic Trees From Protein And Codon Msa
written 12.4 years ago by Pappu

I made MSA of homologous protein sequences by muscle. Next after alignment trimming (removing MSA columns >50% gaps), I built phylogenetic tree by raxml with …
Effective Scoring Function To Compare Multiple Sequence Alignments Or Phylogenetic Trees
written 13.6 years ago by Pappu

I am wondering if there is any good scoring function to compare MSAs obtained from ClustalW, Muscle, T-coffee, Kalign etc. I read that the differences …