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options in fastq-dump

Im creating a GUI for fastq-dump. I dont want to overload my screen in that with options alone.please suggest me options which are frequemtly used in fastq-dump.

ngs sra
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updated by Sukhi Singh Sukhi Singh • written by bharathramh • bharathramh

1 answer

These are the only options that I have used in years, rest you can make a slide down or panel open menu.
fastq-dump "$file" -O "$dir" --gzip

Also, this might be some help to you

SraTailor: GUI software for visualizing high-throughput sequence read archives

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written by Sukhi Singh Sukhi Singh

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