Codon counts from a bam file
How can I find codon counts from a bam alignment? I am still a newbie in next-gen sequencing analysis.
• 2,372 views
•
link
updated
by
Ram
•
written
by
sarthaks442 •
•
written
by
sarthaks442 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Single Nuclei RNA-Sequencing Analysis Without CellRanger
written by 16_masques.vole •
-
Count unique genes in STAR data and unique transcripts in minimap2
written by mounika.boddhireddy •
-
Targeting causative variant in Exome-Sequence data
written by sherbuneri10 •
-
Sliding Window : discriminate partial and fully contained fragments (from a bam file)
written by w.elmselmi •
-
Creating a phyloginectic tree from mapped reads which I obtained using bowtie, then IGV.
written by Rustem •
-
Hardware configuration for Whole genome seq analyses lab
written by abmmki •
-
Python, Biopython And The Analysis Of Next-Gen Sequencing
written by BioICoder •
-
Software To Analyse Chromatin-Interaction Sequencing Datasets?
written by Ahdf-Lell-Kocks •
-
Freelance Bio-Informatics Help Offered
written by Freelancebio •
-
Snp Confidence Calls
written by Vish •
That's not something people normally want to do. Could you describe what your actual biological goals are? That would be helpful in guiding you.
I am actually trying to analyse a codon translation rate model. I have a ribosome profiling dataset. I thought of counting using sam files by searching from a codon array. But that would take huge amount of time I think.