Count unique genes in STAR data and unique transcripts in minimap2
Hello everyone,
I am doing analysis of RNA-sequencing using ENCODE and ENSEMBL data.
I performed STAR analysis for polyA RNA in ENCODE and did quantMode to generate gene counts. Using minimap2, I did mapping to human DNA FASTA and transcriptome fasta using GTF in ensembl.
Please let me know how can I find different genes in STAR and different or unique transcripts in minimap2 SAM/BAM file.
Thank You!!!
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mounika.boddhireddy •
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