protein sequence pdb
If I give protein name in which I should take the sequence whether in organism or uniprot molecule. I'm confused can you elaborate your answer please
proteins
• 1,186 views
•
link
updated
by
Ram
•
written
by
ashamscsoft •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Unable to fetch human protein sequence through UniProt API
written by anasjamshedI am using this Python script to fetch human protein sequences, but it's not fetching any sequence: ```py import requests def fetch_protein_sequence_from_uniprot(protein_name): #Declaring UniProt API …
-
Best way to obtain info from genbank given accession codes
written by sodiumnitrate •Hi all, I have a lot of (order of a million) accession codes that I need to fetch info of from genbank. I have found …
-
How to interpret a Stringdb interaction network of a mouse-proteomics dataset when it is detected o…
written by FarahHello, From an Immunoprecipitation/MS (pull down) analysis from mouse cells, I have a list of Accession IDs (such as P10809, P63261, Q09666, ...). I need …
-
Relation between GO terms of homologous genes in different organisms.
written by zuhaibzulfiqarahmed •Hello, I'm writing a small program that takes in a list of Uniprot gene names (and organisms of interest), and returns a visual representation of …
-
isoforms and the definition of a protein
written by rayoubI'm reviewing the UniProt data model and I'm confused by what is a protein. Originally, I thought that a protein was defined by its sequence …
-
Binding Affinity prediction
written by ashamscsoft •I need to know how to calculate binding affinity manually by using formula. Can anyone help me. I'm confused because the features i have and …
-
conversion of DNA sequence to PDB format
written by ashamscsoft •I need to convert DNA sequence to PDB format.In that conversion, I have a doubt for example if i take information from HGMD and the …
-
Open Reading Frame
written by ashamscsoft •My doubt is if we give our DNA sequence in Expasy or emboss translate it translates the sequence into 6 frames,highlighting some aminoacid sequence in …
-
protein sequence and regarding blast
written by ashamscsoft •<p>I'm a beginner to bioinformatics. I need to know how I should take the protein sequence from protein data bank(PDB).</p> <p>And also i need to …
-
small molecule database for studying allosteric regulation of enzyme activity
written by shumaila.afrin4 •Can you guys please suggest which small molecule database should I use for docking studies on allosteric regulation of enzyme activity using small molecules? There …
Can you first ask question properly?
k now im asking how to get pdb id?
Please write in proper English, please avoid chat style. Please think your question through once again, or nobody will help you.
You need to rephrase your question, we did not get what you are asking.
The following may give you what you are looking for (assuming I understand what you are asking for correctly).
e.g. If you searched "BRCA1" at pdb.org page and then chose the "Gene View" --> "Number of PDB Entities". You should get all PDB ID's for that protein.
Hello ashamscsoft!
We believe that this post does not fit the main topic of this site.
Not a real question.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!