Converting Affymetrix Probe ID to gene symbol(bovine)

I have 24000 Affymetrix Probeset IDs as the rownames for my expression matrix. I want to map these to the official bovine gene symbols. Tell us which R language package operating the commands I use. if annotate package is useful, To use it, tell us write commands in package annotate.

• 2,961 views • link

updated 4.0 years ago by Ram

• written 10.6 years ago by z.biranvand1983 •

1 answer

You can use biomart in R. Read the manual for commands and instructions.

• 0 views • link

written 10.6 years ago by Benn

More posts like this

[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version], hugene10sttranscrip…
written 5.0 years ago by appropiate •

Hello, I have microarray data from the chip [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version], and I am trying to annotate the …
Dose Clariomdhumantranscriptcluster.db package still work?
written 6.8 years ago by jiamacro •

I used to use `clariomdhumantranscriptcluster.db` package to annotate my Clariom D Human WT Assay, and I found that the gene IDs have many NA values …
How do I map Affymetrix probe IDs to gene symbols in R?
written 9.2 years ago by c.ryder3 •

I have an ExpressionSet, combArr.eset, that contains Affymetrix Human Genome U133 Plus 2.0 Array gene expression data. I also have a matrix, exprs_combArr.eset, that contains …
how to use custom cdf in R to convert affyID to gene symbol?
written 9.7 years ago by Raheleh

I used hgu133plus2.db and annotate package in R to convert affymetrix probeset IDs to gene symbols however, I got "NA" for some IDs. I found …
How do I convert Illumina Human HT-12 v4 probeset IDs to Affymetrix HG-U133A probeset IDs?
written 10.2 years ago by discipulus •

I have some data from Illumina Human HT-12 v4 array and I have a tool that requires Affymetrix HG-U133A probeset IDs. I was wondering if …
Load CDF files for Affymetrix ST 2.0 microarrays
written 10.7 years ago by Nathaniel •

I am analysing an Affy Mogene 2.0 ST array, and I would like to collapse all cross-hybridizing probesets into a single transcript cluster. A first …
missing probeID in affymetrix using oligo package
written 11.2 years ago by benhrif.oussama •

Hello, I am working on an affymetrix project. My data are cel files, and I am using oligo package. My script is ```r celFiles<-list.celfiles(dir,full.names=TRUE) rawData<-read.celfiles(celFiles) …
missing probeID in affymetrix using oligo package
written 11.2 years ago by benhrif.oussama •

Hello, I am working on an affymetrix project. My data are cel files, and I am using oligo package. My script is ```r celFiles<-list.celfiles(dir,full.names=TRUE) rawData<-read.celfiles(celFiles) …
Converting Affymetrix Probes To Gene Ids
written 13.1 years ago by Josh •

<p>I downloaded the CGP cell line project expression data and would like to convert the affy probes to official gene symbols. It's the HG U133A …
Converting Affymetrix Probeset Ids To Symbols Or Ensembl Ids
written 13.4 years ago by user1409015 •

<p>I have 22268 Affymetrix Probeset IDs as the rownames for my expression matrix. I want to map these to the official HUGO gene symbols. However, …