I have a set of assembled contigs (genomic sequences). These contigs were assembled using a de novo short read assembler . I map/align the original …

Hello, I have short reads (Illumina) data with x30-40 depth for several varieties of a plant genome. A reference genome for the same species exists. …

Majority of the currently available metagenomics binning tools are designed to work with short reads and contigs obtained from short reads. Does someone know if …

Dear all, in my previous post (https://www.biostars.org/p/303214/#303734), some people suggested that it's better to correct errors in log reads from PacBio sequel using short reads …

Hi members, I am working on Gut Microbiota. I have isolated my bacteria and have it sequenced by Illumina HiSEQ. They gave me a file …

<p>What WGS data processing software is designed to accept contigs as an input?</p>

<p>Is Omixon software adequate for the bacterial whole genome data processing? Can it process short reads and contigs against a .gb reference? Does anybody apply …

<p><em><strong>After </strong></em>error-correcting PacBio long reads using Illumina short-reads, what aligners are adept for aligning the <strong>corrected </strong>PacBio long reads against the genome?</p> <p>Should I think …

<p>We assembled a genome around 5GB. Now we are trying to map the Illumina reads to the genome. There are many aligners that can do …

<p>I've got a BAM file 'short-A' of my short reads against the thousands of assembled contigs of my genome A, and I now would like …