Hello everyone! I am currently working on a cut&run experiment using the cutruntools pipeline. I see in the paper that the pipeline exports a metrics …

Hello, What are these formats? .ab1 and .scf difference between .ab1 and .scf? Thanks Sara

Does anyone know if reads, that are marked as duplicates by Picard MarkDuplicates.jar, are taken into account when calculating metrics like 'on bait' or 'on …

<p>Hello all, I have a file with hybrid metrics from aligned exome (X20) data(e.g Genome_size, Bait_territory, Target_territory, Bait_design_efficiency, Total_reads, Pf_reads....etc). How do i calculate the …

<p>Hi,</p> <p>I want to calculate some aligment quality metrics from whole exome data (paired-end Illumina). </p> <p>I used the picard tool CollectAlignmentSummaryMetrics which provides me …

<p>Hi everyone, </p> <p>I don't know which column change when we fixmate the reads using PICARD? could you please tell me what is fixmate? (I …

<p>Hello, </p> <p>I would like to know what is in .sai file after alignment with <a href='http://bio-bwa.sourceforge.net/'>BWA</a>. what should be remove before convert it to …

<p>Hello </p> <p>what is the difference between hg18 and hg19?</p> <p>Thanks </p> <p>Sara</p>

<p>Hi everyone, </p> <p>I have a Sam files and I applied different other analysis but i don't know which column add or change when we …

<p>Hello everyone, </p> <p>I want to do the differentially expressed analysis on the miRNA NGS sequence count data from two library ( control, Condition).</p> <p>what …