Alignment DNA sequence tool
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You may perform blast2 on the NCBI website with your own sequence as query and the 22500 sequences as subject although I'm not sure what's the max. number of subject sequences allowed. If that does not work, you may try local blast with the tabular output.
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Yongjie Zhang
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Can you further explain exactly what you wish to accomplish?
Hello
thank you Brian Bushnell for your reply
I have a sequence of 1000 pb and I would like detect all the octamer pattern in this sequence and give a score for each detected pattern