How does GATK caculate the HaplotypeScore in Unified Genotyper
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Entering edit mode
8.4 years ago
naruto1nrt ▴ 40

I have a snp with HaplotypeScore=14 which must be filtered by hard filter(HaplotypeScore>13). But I am sure about this snp is true.

So do anybody know how does GATK caculate the HaplotypeScore in Unified Genotyper?

Thanks

next-gen GATK SNP software-error Unified-Genotyper • 2.1k views
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