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Script convert ltr_finder output file to fasta format

Dear all

Now I want to extract fasta file from LTR-finder output , while I have poor program knowledge, and don't know how to do it. So I want to ask if anyone can provide me an available script or method to do this. Thanks!

script ltr_finder fasta
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updated by TWV • TWV • written by Ginsea Chen Ginsea Chen

Have you found a solution? if so, please share. Same question here.

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written by TWV • TWV

1 answer

First use cnv_ltrfinder2gff.pl to convert the output to gff format, then use bedtools getfasta to convert gff to a fasta list.

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written by TWV • TWV

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