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How to check whether a genome is circular

Hello

I have a sequence generated by SMRT sequencing. It has only 1 contig. I want be sure that it is a complete genome and also check whether it is circular or not. How can I do so?

Thanks

assembly sequencing genome blast
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updated by Ram Ram • written by utkarsh.sood • utkarsh.sood

That information is a bit outdated by now. See my answer below.

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written by lexnederbragt lexnederbragt

1 answer

Have a look here. Another tool that I tried and that seems to be working is Circlator, but I haven't tested it extensively.

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updated by Ram Ram • written by lexnederbragt lexnederbragt

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