R package for GSEA

Question

[kynnjo]

Does anyone know how to download and install the R-GSEA package?

If I try to register via http://www.broadinstitute.org/cancer/software/gsea/software/software_index.html, I just get a 404 error.

Is there any other source for this package?

Answer 1

[h.mon]

There are several packages implementing GSEA on Bioconductor, gage and phenoTest are two examples, surely someone will point more.

[Michael Schubert]

piano (BioConductor) is another; there are also some set statistics implemented in limma (see https://www.bioconductor.org/packages/3.3/bioc/manuals/limma/man/limma.pdf, romer, roast, camera)