downloading and running tidyverse package in R

Hi, I'm trying to download the package 'tidyverse' in R studio for rna seq analysis. This will allow me to transfer Kallisto results into R.

I have used the following command: install.packages("tidyverse"). However, I get the following error message when I try to run the function library(tidyverse): Error in library(tidyverse) : there is no package called ‘tidyverse’.

I also tried the install packages option in r studio.

If anyone knows how to install this package please let me know.

Thankyou

seq analysis tidyverse rna

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written 4.1 years ago by bioinformatics •

It would be more informative if you included the error you have when running install.packages("tidyverse")

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written 4.1 years ago by Basti •

I get the following error message:

Error in library(tidyverse) : there is no package called ‘tidyverse’.

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written 4.1 years ago by bioinformatics •

Read my question carefully please, this is the error you get when running library(tidyverse)

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written 4.1 years ago by Basti •

Apologises please see below:

There is a binary version available but the source version is later:
          binary source needs_compilation
tidyverse  1.3.1  1.3.2             FALSE

installing the source package ‘tidyverse’

trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.3.2.tar.gz'
Content type 'application/x-gzip' length 702514 bytes (686 KB)
downloaded 686 KB

    * installing *source* package 'tidyverse' ...
    ** package 'tidyverse' successfully unpacked and MD5 sums checked
    ** using staged installation
    ** R
    ** inst
    ** byte-compile and prepare package for lazy loading
    Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
      namespace 'rlang' 0.4.12 is being loaded, but >= 1.0.2 is required
    Calls: <Anonymous> ... namespaceImport -> loadNamespace -> namespaceImport -> loadNamespace
    Execution halted
    ERROR: lazy loading failed for package 'tidyverse'
    * removing 'C:/Users/Mariam/Documents/R/win-library/4.1/tidyverse'
    Warning in install.packages :
      installation of package ‘tidyverse’ had non-zero exit status

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written 4.1 years ago by bioinformatics •

The error is pretty clear : "namespace 'rlang' 0.4.12 is being loaded, but >= 1.0.2 is required". You need to update rlang : install.packages("rlang")

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written 4.1 years ago by Basti •

I managed to load the package. Thanks for your help.

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written 4.1 years ago by bioinformatics •

What operating system are you using? I had a similar problem using a Linux distribution, and it turned out that I needed to have Debian R installed instead of Ubuntu R.

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written 4.1 years ago by Jeremy •

I'm using R studio on a Microsoft laptop

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written 4.1 years ago by bioinformatics •

You have not installed "tidyverse" package completely yet. It may be due to the network or proxy issues. Better to take a screenshot on error message and attach it here.

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written 4.1 years ago by Helix •

Thanks for your help. This is the error message I get after I run the command install.packages("tidyverse")

There is a binary version available but the source version is later:
          binary source needs_compilation
tidyverse  1.3.1  1.3.2             FALSE

installing the source package ‘tidyverse’

trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.3.2.tar.gz'
Content type 'application/x-gzip' length 702514 bytes (686 KB)
downloaded 686 KB

* installing *source* package 'tidyverse' ...
** package 'tidyverse' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
  namespace 'rlang' 0.4.12 is being loaded, but >= 1.0.2 is required
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> namespaceImport -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'tidyverse'
* removing 'C:/Users/Mariam/Documents/R/win-library/4.1/tidyverse'
Warning in install.packages :
  installation of package ‘tidyverse’ had non-zero exit status

• 0 views • link

written 4.1 years ago by bioinformatics •

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