Motif coordinates and cell line secences
Hi,
I have two questions,
- I got motifs form a peak file using linux desktop based software, but motifs do not have coordinates, is there any software can give me coordinates with respective Motifs.
- I want to use HEK293 cell lines for aging conditions. is there any method or protocol for cell line aging and using any TF for chip-seq
Regards
1 answer
You can use FIMO in the MEME suite to search a genome for the motifs you provide.
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Alex Reynolds
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