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Forum: Data Vizualization or Pathway Analysis

Does anyone have any recommendations for an open source that allows for data visualization or pathway analysis; specific for transcriptome sequencing?

next-gen rna-seq
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updated by Ram Ram • written by quevedo.marisa • quevedo.marisa

1 answer

There are many tools to do that. Very easy and most informative are various cytoscape plugins. I would recommend 2 plugins named Bingo and EnrichmentMap. You can also generate some nice images using kegg online tool. It will give you various pathway images as per your geneset.

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updated by Ram Ram • written by Chirag Parsania Chirag Parsania

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