Is estimated coverage of Nonpareil reliable?
Hi everyone, I used Nonpareil to estimate my metagenomic sequencing coverage. And the results show that the coverage is more than 90%. It should be enough, however many of my draft genomes are too little after binning. So I would like to know if the result of Nonpareil is reliable?
• 1,967 views
•
link
written
by
liuyifan2014 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Different QC strategies for ONT reads in read-based vs assembly-based metagenomics
written by Luwell •
-
Using metagenome assembly and binning to identify and mitigate contamination in a genome
written by btc347 •
-
Whole Genome Bisulfite Sequencing file types / Epigenetics
written by andreasstuermer •
-
Estimating the number of genomes in a metagenome
written by pfchuckran •
-
Estimating error rate across my 16S MiSeq amplicon sequencing
written by robert.murphy •
-
Mapping of metagenomic reads on genomes - length criteria ?
written by lagartija
-
Problem with Bedtools
written by alvarocentron91 •
-
Evaluating the quality of draft genomes: checkm vs reapr
written by fhsantanna
-
Illumina Pe Reads Mapping To Reference Genome
written by rohita.sinha •
-
Sanger Sequencing Gaps For Genome Closure?
written by Neo •
