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Tools to find overlapping/common interactions between two networks

Hi,

Is there any tool to find common/overlap interactions between two networks.

Thank you,

Naresh D J

networks overlap
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updated by Ram Ram • written by Naresh D J • Naresh D J

3 answers

I strongly recommend you Cytoscape in order to analyse Networks:

http://www.cytoscape.org/

Once controlled the main and basic functions, the thing you need to do is very well explained here:

visualize overlapping nodes in Cytoscape

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written by samuelmiver samuelmiver

If you code interactions in a network in a two-column format (and for each row you place the columns in alphabetical order) then you can just use shell tools like cat, join, unique, sort to answer your question or do multiple other analyses.

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updated by Ram Ram • written by abascalfederico abascalfederico

Try using 'CompNet' available at https://web.rniapps.net/compnet/

Publication link : https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1013-x

• 1 views • link
written by kuntal.bhusan • kuntal.bhusan

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