Hi everyone, I'm trying to test and interpret some GSEA result (e.g. 100 genes between grA and grB). Usually, when we use some carefully designed …

What causes over-expression of a gene? And what is the difference between over expression and up-regulation? Is there a way to measure expression profiles of …

I have a Site Frequency Spectrum graph with K value on the x-axis and Number of Variants on the y-axis. I'm not sure what the …

Hi, I'm trying to graph a figure with Y-axis (gene 1) and X-axis (multiples genes for a cell phenotype). I also want to get statistics …

In the cummeRbund Package for analysis of CuffDiff data, the `dispersionPlot()` function allows us to know whether over-dispersion has happened with our sample. In the …

I am working on RNA-seq data with `cufflinks`. I now use `cummeRbund` to analyze my results. `cummeRbund` performs expression quantification between genes / isoforms / …

When I read some papers which have used third sequencing technology, e.g. PacBio iso-seq, I didn't find any paper which use the long reads to …

I would like to develop a web database that allows users to input a single query (let's say one gene). Then I'd like to return …

This may sound rudimentary, but where is KmerGenie getting it's y-axis (number of genomic k-mers) numbers from when it goes to plot the final plot …

I have a set of biomarkers (genes) and I'd like to validate it analysing the Kaplan Meier survival curve. I had a look at the …